Automatic segmentation of non-human brain

ImFusion Labels
1

Windows 10
InFusion Suite Demo Version

Dear ImFusion,

I would like to crate segmentation of non-human brain areas using MRI scans. Interactive segmentation does not produce wanted results as the MRI data are low quality. As I have multiple brain images and have to mark multiple brain areas in each (neocortex, cortex, hippocampus, striatum,…) I would like to avoid drawing each area separately for each of the brains. Is there a way to run automatic segmentation in ImFusion?
I attached a screenshot of my data as I am having troubles updating the.nii file.

size animal 20190904-04
size animal 20190904-04732×446 52.7 KB

Thank you very much for your advice.
Best Regards,
PhD student, Lara Vrbanec

2

Dear Lara,
For segmentation applications, we recommend using our Labels software that includes a variety of annotation modes (a demo version is available on our website: https://www.imfusion.com/resources/download)
In particular, the Interactive Segmentation mode included in Labels allows segmentation with multiple labels.
The other annotation modes can also help you refine or fix the segmentations.